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Table 1 Enriched pathways in differentially expressed genes in brain and primary cultures of Fmr1KO mice

From: Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

KEGG pathway (ENTREZ ID as input)

p value

No. of genes

Fold enrichment

Hippocampal culture

   

mmu04910:Insulin signaling pathway

0.001

35

1.748

mmu03040:Spliceosome

0.001

32

1.801

mmu00900:Terpenoid backbone biosynthesis

0.002

8

3.796

mmu04720:Long-term potentiation

0.003

20

2.013

mmu04120:Ubiquitin mediated proteolysis

0.008

32

1.586

mmu04360:Axon guidance

0.009

31

1.584

mmu03010:Ribosome

0.011

22

1.740

mmu05211:Renal cell carcinoma

0.013

19

1.803

mmu04540:Gap junction

0.017

21

1.701

mmu04722:Neurotrophin signaling pathway

0.017

29

1.541

mmu00230:Purine metabolism

0.022

33

1.461

mmu00650:Butanoate metabolism

0.029

11

2.088

mmu04012:ErbB signaling pathway

0.031

21

1.603

mmu05215:Prostate cancer

0.038

21

1.567

mmu03018:RNA degradation

0.039

15

1.748

mmu03020:RNA polymerase

0.040

9

2.214

 mmu00790:Folate biosynthesis

0.070

5

3.019

 mmu04914:Progesterone-mediated oocyte maturation

0.078

19

1.485

 mmu04150:mTOR signaling pathway

0.080

13

1.661

 mmu00240:Pyrimidine metabolism

0.088

20

1.444

 mmu05220:Chronic myeloid leukemia

0.088

17

1.506

Cortical culture

   

mmu04622:RIG-I-like receptor signaling pathway

0.001

23

2.027

mmu03040:Spliceosome

0.001

37

1.686

mmu04722:Neurotrophin signaling pathway

0.006

36

1.548

mmu04144:Endocytosis

0.012

48

1.395

mmu04660:T cell receptor signaling pathway

0.013

31

1.529

mmu04010:MAPK signaling pathway

0.016

63

1.308

mmu04120:Ubiquitin mediated proteolysis

0.018

36

1.444

mmu05220:Chronic myeloid leukemia

0.029

22

1.577

 mmu04720:Long-term potentiation

0.052

19

1.548

 mmu00534:Heparan sulfate biosynthesis

0.062

9

2.016

 mmu03450:Non-homologous end-joining

0.076

6

2.481

 mmu04062:Chemokine signaling pathway

0.080

41

1.267

 mmu05210:Colorectal cancer

0.096

22

1.391

Hippocampus in situ

   

mmu04144:Endocytosis

0.013

14

2.133

mmu04060:Cytokine-cytokine receptor interaction

0.013

16

1.986

mmu05322:Systemic lupus erythematosus

0.014

8

3.088

mmu04514:Cell adhesion molecules (CAMs)

0.017

11

2.348

mmu05320:Autoimmune thyroid disease

0.028

6

3.451

 mmu05330:Allograft rejection

0.051

5

3.523

 mmu04672:Intestinal immune network for IgA production

0.082

5

2.998

 mmu04610:Complement and coagulation cascades

0.099

6

2.415

Cortex in situ

   

mmu00590:Arachidonic acid metabolism

0.016

9

2.727

mmu04210:Apoptosis

0.029

9

2.439

 mmu04640:Hematopoietic cell lineage

0.059

8

2.275

 mmu04060:Cytokine-cytokine receptor interaction

0.064

16

1.623

 mmu00601:Glycosphingolipid biosynthesis

0.083

4

3.838

  1. Italics highlight pathways with p values <0.05