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Table 3 Top five SNPs from tier 3 analysis: genome-wide

From: The female protective effect in autism spectrum disorder is not mediated by a single genetic locus

 

AGRE discovery (208 cases, 151 controls)

SSC replication (207 cases, 676 controls)

SNP

Allele 1/allele 2

Affected allele 1 frequency (%)

Unaffected allele 1 frequency (%)

Odds ratio

P value

Corrected P value

Affected allele 1 frequency (%)

Unaffected allele 1 frequency (%)

Odds ratio

P value

Predicted

.

97.0

<24.3

>88

≤1×10−8

≤0.05

97.0

<24.3

>88

≤1×10−8

rs2387667

G/A

33.7

13.2

2.54

1.1×10−5

1.0

15.9

19.5

0.82

0.25

rs867764

A/G

33.7

13.2

2.54

1.1×10−5

1.0

23.2

23.5

0.99

0.92

rs10518301

A/G

25.0

47.0

0.53

1.4×10−5

1.0

40.1

41.1

0.98

0.79

rs9302760

A/G

75.0

53.0

1.42

1.4×10−5

1.0

60.4

56.4

1.07

0.31

rs4745013

G/A

36.1

58.9

0.61

1.7×10−5

1.0

49.8

47.8

1.04

0.62